PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54470.1.p
Common NameBRADI_2g54470, LOC100822222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 203aa    MW: 21871.2 Da    PI: 9.0135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00184365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  Bradi2g54470.1.p 43 FECKTCSRQFPTFQALGGHRASH 65
                      89**********99999998887 PP

2zf-C2H211.50.00094112134123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp Cg  F     L  H+r+H
  Bradi2g54470.1.p 112 HECPVCGLEFAVGQALGGHMRRH 134
                       79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-84165No hitNo description
PfamPF139121.5E-124267IPR007087Zinc finger, C2H2
SMARTSM003550.384365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7234370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-8107134No hitNo description
PfamPF139124.0E-10111137IPR007087Zinc finger, C2H2
SMARTSM003550.13112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSKRGRGVWE MDTARVLMLL AQHHQHQQQQ QQQAPLAMRG RVFECKTCSR QFPTFQALGG  60
HRASHKRPRL LQQQQQPQNA LVNDAAALCL GRQITLPRQP QQMPVPAKPR AHECPVCGLE  120
FAVGQALGGH MRRHRAEADA PTSGCKAAAP ETPTACCDAD GGICLDLNLT PSENCAKCRS  180
VAAGLGARQG VPKALAMLDC SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2442413e-36DQ244241.1 Zea mays clone 3770 mRNA sequence.
GenBankEU9702193e-36EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567257.11e-145PREDICTED: zinc finger protein ZAT12-like
TrEMBLI1HT761e-145I1HT76_BRADI; Uncharacterized protein
STRINGBRADI2G54470.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-29C2H2 family protein